ScanImage, Janelia Farms ScanImage, laser scanning microscope, two-photon imaging, user functions, user plugins, navigator, movement tracker, positions, regions of interest, in vivo imaging
These Matlab functions extend Janelia Farms' ScanImage microscope control software. The functions allow the user to view, mark and track positions of the motor stage/objective in x, y, and z, which get displayed in a separate window. This helps to keep track of the stage movements, regions of interest and makes it easy to document areas imaged and map out the specimen being investigated. For detailed information about the functionality as well as installation, view the included manual file.
Meyer Zum Alten Borgloh, Stephan, "Meyer Navigator: User ScanImage Functions to Show x/y Positions of the Stage/Objective in a Coordinate System" (2013). Gilbert Laboratory. 1.