calcium imaging, laser scanning microscope, two-photon imaging, user functions, automated segmentation, data analysis, regions of interest, in vivo imaging
A Matlab GUI that automatically segments fluorescence image stacks into ROIs based on differential morphology and fluorescence activity of the individual cells. The time course data of each ROI gets extracted and plotted. External data from behavioral experiments and sensory stimuli can be integrated to compare for task and stimulus dependent neuronal events
Meyer Zum Alten Borgloh, Stephan, "CalciumSignalExtract: A Matlab GUI to Automatically Extract the Activity of Multiple Cells from Calcium Imaging Data" (2015). Gilbert Laboratory. 2.